Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs71204079 chr4:70072013 TA/T 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs7123243 chr11:125563559 G/A 0.000214 117 45.87 36.9 23.42 KM Plot
THYM rs7123317 chr11:125586469 G/C 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs71299622 chr3:52917038 G/A 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs71320535 chr21:44078359 G/A 0.000118 115 41.22 41.05 28.43 KM Plot
THYM rs71320536 chr21:44080009 C/T 0.000116 116 39.75 49.4 28.43 KM Plot
THYM rs71320537 chr21:44088683 C/T 0.000105 117 40.67 49.4 28.43 KM Plot
THYM rs7133353 chr12:4054429 C/T 1.06E-8 119 42.9 38.13 12.63 KM Plot
THYM rs7137047 chr12:121615786 G/C 2.06E-5 117 48 46.27 24.87 KM Plot
THYM rs71391580 chr16:24842818 C/G 5.17E-6 116 49.4 28.43 31.37 KM Plot
THYM rs71422591 chr2:119513585 A/G 0.000149 118 42.25 32.7 28.43 KM Plot
THYM rs7145309 chr14:78342399 C/T 6.5E-5 119 25.83 38.48 50.03 KM Plot
THYM rs7146020 chr14:78358319 C/T 0.000168 119 24.17 50.13 37.63 KM Plot
THYM rs7149911 chr14:78355819 C/T 0.000135 119 25.83 39.75 49.5 KM Plot
THYM rs7151404 chr14:78355876 T/C 0.000135 119 25.83 39.75 49.5 KM Plot